Photo credit: Zepeng Photo credit: Zepeng

Publications

Guimin Gao, Julian McClellan, Alvaro N Barbeira, Peter N Fiorica, James L Li, Zepeng Mu, Olufunmilayo I Olopade, Dezheng Huo, Hae Kyung Im (2024). A multi-tissue, splicing-based joint transcriptome-wide association study identifies susceptibility genes for breast cancer. The American Journal of Human Genetics.

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Haley E Randolph, Katherine A Aracena, Yen-Lung Lin, Zepeng Mu, Luis B Barreiro (2024). Shaping immunity: The influence of natural selection on population immune diversity. Immunological Reviews.

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Katherine A Aracena, Yen-Lung Lin, Kaixuan Luo, Alain Pacis, Saideep Gona, Zepeng Mu, Vania Yotova, Renata Sindeaux, Albena Pramatarova, Marie-Michelle Simon, Xun Chen, Cristian Groza, David Lougheed, Romain Gregoire, David Brownlee, Carly Boye, Roger Pique-Regi, Yang Li, Xin He, David Bujold, Tomi Pastinen, Guillaume Bourque, Luis B Barreiro (2024). Epigenetic variation impacts individual differences in the transcriptional response to influenza infection. Nature Genetics.

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Zepeng Mu, Haley E Randolph, Raul Aguirre-Gamboa, Ellen Ketter, Anne Dumaine, Veronica Locher, Cary Brandolino, Xuanyao Liu, Daniel E Kaufmann, Luis B Barreiro, Yang I. Li (2024). Impact of disease-associated chromatin accessibility QTLs across immune cell types and contexts. medRxiv.

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Yu Zhao, Ran Zhou, Zepeng Mu, Peter Carbonetto, Xiaoyuan Zhong, Bingqing Xie, Kaixuan Luo, Candace M Cham, Jason Koval, Xin He, Andrew W Dahl, Xuanyao Liu, Eugene B Chang, Anindita Basu, Sebastian Pott (2024). Cell-type-resolved chromatin accessibility in the human intestine identifies complex regulatory programs and clarifies genetic associations in Crohn's disease. medRxiv.

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Zepeng Mu, Wei Wei, Benjamin Jung Fair, Jinlin Miao, Ping Zhu, Yang I Li (2021). The impact of cell-type and context-dependent regulatory variants on human immune traits. Genome Biology.

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Mengjie Chen, Qi Zhan, Zepeng Mu, Lili Wang, Zhaohui Zheng, Jinlin Miao, Ping Zhu, Yang I Li (2021). Alignment of single-cell RNA-seq samples without over-correction using kernel density matching. Genome Research.

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Peter Ebert, Peter A Audano, Qihui Zhu, Bernardo Rodriguez-Martin, David Porubsky, Marc Jan Bonder, Arvis Sulovari, Jana Ebler, Weichen Zhou, Rebecca Serra Mari, others (2021). Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science.

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Briana E Mittleman, Sebastian Pott, Shane Warland, Tony Zeng, Zepeng Mu, Mayher Kaur, Yoav Gilad, Yang I Li (2020). Alternative polyadenylation mediates genetic regulation of gene expression. eLife.

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Matthew R Trendowski, Omar El-Charif, Mark J Ratain, Patrick Monahan, Zepeng Mu, Heather E Wheeler, Paul C Dinh, Darren R Feldman, Shirin Ardeshir-Rouhani-Fard, Robert J Hamilton, David J. Vaughn, Chunkit Fung, Christian Kollmannsberger, Taisei Mushiroda, Michiaki Kubo, Robyn Hannigan, Frederick Strathmann, Lawrence H. Einhorn, Sophie D. Fossa, Lois B. Travis, Eileen M. Dolan (2019). Clinical and genome-wide analysis of serum platinum levels after cisplatin-based chemotherapy. Clinical Cancer Research.

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Zepeng Mu, Zhuoning Zou, Ye Yang, Wenbo Wang, Yue Xu, Jianyi Huang, Ruiling Cai, Ye Liu, Yajin Mo, Boyi Wang, Yiqun Dang, Yongming Li, Yushan Liu, Yueren Jiang, Qingyang Tan, Xiaohong Liu, Cheng Hu, Hua Li, Sha Wei, Chunbo Lou, Yang Yu, Jiangyun Wang (2018). A genetically engineered Escherichia coli that senses and degrades tetracycline antibiotic residue. Synthetic and Systems Biotechnology.

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